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ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes
Publication
Yu S,
Vogel J,
Förstner KU
(2018)
GigaScience, 7, 9, giy096, 10.1093/gigascience/giy096, 30169674
GigaScience, 7, 9, giy096, 10.1093/gigascience/giy096, 30169674
RNA-based recognition and targeting: sowing the seeds of specificity
Publication
Gorski SA,
Vogel J,
Doudna JA
(2017)
Nature Reviews Molecular Cell Biology, 18, 4, 215-228, 10.1038/nrm.2016.174, 28196981
Nature Reviews Molecular Cell Biology, 18, 4, 215-228, 10.1038/nrm.2016.174, 28196981
Regulatory small RNAs from the 3' regions of bacterial mRNAs
Publication
Miyakoshi M,
Chao Y,
Vogel J
(2015)
Current Opinion in Microbiology, 24, 132-9, 10.1016/j.mib.2015.01.013, 25677420
Current Opinion in Microbiology, 24, 132-9, 10.1016/j.mib.2015.01.013, 25677420
Cross talk between ABC transporter mRNAs via a target mRNA-derived sponge of the GcvB small RNA
Publication
Miyakoshi M,
Chao Y,
Vogel J
(2015)
The EMBO Journal, 34, 11, 1478-92, 10.15252/embj.201490546, 25630703
The EMBO Journal, 34, 11, 1478-92, 10.15252/embj.201490546, 25630703
READemption-a tool for the computational analysis of deep-sequencing-based transcriptome data
Publication
Förstner KU,
Vogel J,
Sharma CM
(2014)
Bioinformatics, 30, 23, 3421-3, 10.1093/bioinformatics/btu533, 25123900
Bioinformatics, 30, 23, 3421-3, 10.1093/bioinformatics/btu533, 25123900
Identification and Characterization of Small Non-coding RNAs in Bacteria
Publication
Podkaminski D,
Bouvier M,
Vogel J
(2014)
, 136, 719-786, 10.1002/9783527647064.ch33
, 136, 719-786, 10.1002/9783527647064.ch33
Hfq-associated Regulatory Small RNAs
Publication
Corcoran CP,
Papenfort K,
Vogel J
(2012)
In: Regulatory RNAs in Prokaryotes (eds Marchfelder A, Hess WR), 15-50, 10.1007/978-3-7091-0218-3_2
In: Regulatory RNAs in Prokaryotes (eds Marchfelder A, Hess WR), 15-50, 10.1007/978-3-7091-0218-3_2
Differential RNA Sequencing (dRNA-Seq): Deep-Sequencing-Based Analysis of Primary Transcriptomes
Publication
Borries A,
Vogel J,
Sharma CM
(2012)
In: Tag-based next generation sequencing (eds Kahl G, Harbers M ), 316, 109-121, 10.1002/9783527644582.ch7
In: Tag-based next generation sequencing (eds Kahl G, Harbers M ), 316, 109-121, 10.1002/9783527644582.ch7
The mammalian microRNA response to bacterial infections
Publication
Eulalio A,
Schulte LN,
Vogel J
(2012)
RNA Biology, 9, 6, 742-50, 10.4161/rna.20018, 22664920
RNA Biology, 9, 6, 742-50, 10.4161/rna.20018, 22664920
Regulation by small RNAs in bacteria: expanding frontiers
Publication
Storz G,
Vogel J,
Wassarman KM
(2011)
Molecular Cell, 43, 6, 880-91, 10.1016/j.molcel.2011.08.022, 21925377
Molecular Cell, 43, 6, 880-91, 10.1016/j.molcel.2011.08.022, 21925377