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Molecular mechanism of mRNA repression in trans by a ProQ‐dependent small RNA
Publication
Smirnov A,
Wang C,
Drewry LL,
Vogel J
(2017)
The EMBO Journal, 36, 8, 1029-45, 10.15252/embj.201696127, 28336682
The EMBO Journal, 36, 8, 1029-45, 10.15252/embj.201696127, 28336682
Structure of the Escherichia coli ProQ RNA-binding protein
Publication
Gonzalez GM,
Hardwick SW,
Maslen SL,
Skehel JM,
Holmqvist E,
Vogel J,
Bateman A,
Luisi BF,
Broadhurst RW
(2017)
RNA, 23, 5, 696-711, 10.1261/rna.060343.116, 28193673
RNA, 23, 5, 696-711, 10.1261/rna.060343.116, 28193673
In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways
Publication
Chao Y,
Li L,
Girodat D,
Förstner KU,
Said N,
Corcoran C,
Smiga M,
Papenfort K,
Reinhardt R,
Wieden H,
Luisi BF,
Vogel J
(2017)
Molecular Cell, 65, 1, 39-51, 10.1016/j.molcel.2016.11.002, 28061332
Molecular Cell, 65, 1, 39-51, 10.1016/j.molcel.2016.11.002, 28061332
Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation
Publication
Das S,
Lindemann C,
Young BC,
Muller J,
Österreich B,
Ternette N,
Winkler A,
Paprotka K,
Reinhardt R,
Förstner KU,
Allen E,
Flaxman A,
Yamaguchi Y,
Rollier CS,
van Diemen P,
Blättner S,
Remmele CW,
Selle M,
Dittrich M,
Müller T,
Vogel J,
Ohlsen K,
Crook DW,
Massey R,
Wilson DJ,
Rudel T,
Wyllie DH,
Fraunholz MJ
(2016)
PNAS, 113, 22, E3101-10, 10.1073/pnas.1520255113, 27185949
PNAS, 113, 22, E3101-10, 10.1073/pnas.1520255113, 27185949
Grad-seq guides the discovery of ProQ as a major small RNA-binding protein
Publication
Smirnov A,
Förstner KU,
Holmqvist E,
Otto A,
Günster R,
Becher D,
Reinhardt R,
Vogel J
(2016)
PNAS, 113, 41, 11591-11596, 10.1073/pnas.1609981113, 27671629
PNAS, 113, 41, 11591-11596, 10.1073/pnas.1609981113, 27671629
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Publication
Jiang Y,
Oron TR,
Clark WT,
Bankapur AR,
D'Andrea D,
Lepore R,
Funk CS,
Kahanda I,
Verspoor KM,
Ben-Hur A,
Koo DC,
Penfold-Brown D,
Shasha D,
Youngs N,
Bonneau R,
Lin A,
Sahraeian SM,
Martelli PL,
Profiti G,
Casadio R,
Cao R,
Zhong Z,
Cheng J,
Altenhoff A,
Skunca N,
Dessimoz C,
Dogan T,
Hakala K,
Kaewphan S,
Mehryary F,
Salakoski T,
Ginter F,
Fang H,
Smithers B,
Oates M,
Gough J,
Törönen P,
Koskinen P,
Holm L,
Chen C,
Hsu W,
Bryson K,
Cozzetto D,
Minneci F,
Jones DT,
Chapman S,
Bkc D,
Khan IK,
Kihara D,
Ofer D,
Rappoport N,
Stern A,
Cibrian-Uhalte E,
Denny P,
Foulger RE,
Hieta R,
Legge D,
Lovering RC,
Magrane M,
Melidoni AN,
Mutowo-Meullenet P,
Pichler K,
Shypitsyna A,
Li B,
Zakeri P,
ElShal S,
Tranchevent L,
Das S,
Dawson NL,
Lee D,
Lees JG,
Sillitoe I,
Bhat P,
Nepusz T,
Romero AE,
Sasidharan R,
Yang H,
Paccanaro A,
Gillis J,
Sedeño-Cortés AE,
Pavlidis P,
Feng S,
Cejuela JM,
Goldberg T,
Hamp T,
Richter L,
Salamov A,
Gabaldon T,
Marcet-Houben M,
Supek F,
Gong Q,
Ning W,
Zhou Y,
Tian W,
Falda M,
Fontana P,
Lavezzo E,
Toppo S,
Ferrari C,
Giollo M,
Piovesan D,
Tosatto SC,
Del Pozo A,
Fernández JM,
Maietta P,
Valencia A,
Tress ML,
Benso A,
Di Carlo S,
Politano G,
Savino A,
Rehman HU,
Re M,
Mesiti M,
Valentini G,
Bargsten JW,
van Dijk AD,
Gemovic B,
Glisic S,
Perovic V,
Veljkovic V,
Veljkovic N,
Almeida-E-Silva DC,
Vencio RZ,
Sharan M,
Vogel J,
Kansakar L,
Zhang S,
Vucetic S,
Wang Z,
Sternberg MJ,
Wass MN,
Huntley RP,
Martin MJ,
O'Donovan C,
Robinson PN,
Moreau Y,
Tramontano A,
Babbitt PC,
Brenner SE,
Linial M,
Orengo CA,
Rost B,
Greene CS,
Mooney SD,
Friedberg I,
Radivojac P
(2016)
Genome Biology, 17, 1, 184, 10.1186/s13059-016-1037-6, 27604469
Genome Biology, 17, 1, 184, 10.1186/s13059-016-1037-6, 27604469
The target spectrum of SdsR small RNA in Salmonella
Publication
Fröhlich KS,
Haneke K,
Papenfort K,
Vogel J
(2016)
Nucleic Acids Research, 44, 21, 10406-22, 10.1093/nar/gkw632, 27407104
Nucleic Acids Research, 44, 21, 10406-22, 10.1093/nar/gkw632, 27407104
cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in Bacteroides
Publication
Cao Y,
Förstner KU,
Vogel J,
Smith CJ
(2016)
Journal of Bacteriology, 198, 18, 2410-8, 10.1128/JB.00381-16, 27353652
Journal of Bacteriology, 198, 18, 2410-8, 10.1128/JB.00381-16, 27353652
The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation
Publication
Berger P,
Knödler M,
Förstner KU,
Berger M,
Bertling C,
Sharma CM,
Vogel J,
Karch H,
Dobrindt U,
Mellmann A
(2016)
Scientific Reports, 6, 35307, 10.1038/srep35307, 27748404
Scientific Reports, 6, 35307, 10.1038/srep35307, 27748404
Gifsy-1 Prophage IsrK with Dual Function as Small and Messenger RNA Modulates Vital Bacterial Machineries
Publication
Hershko-Shalev T,
Odenheimer-Bergman A,
Elgrably-Weiss M,
Ben-Zvi T,
Govindarajan S,
Seri H,
Papenfort K,
Vogel J,
Altuvia S
(2016)
PLOS Genetics, 12, 4, e1005975, 10.1371/journal.pgen.1005975, 27057757
PLOS Genetics, 12, 4, e1005975, 10.1371/journal.pgen.1005975, 27057757