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An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs
Publication
Chao Y,
Papenfort K,
Reinhardt R,
Sharma CM,
Vogel J
(2012)
The EMBO Journal, 31, 20, 4005-19, 10.1038/emboj.2012.229, 22922465
The EMBO Journal, 31, 20, 4005-19, 10.1038/emboj.2012.229, 22922465
RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq
Publication
Argaman L,
Elgrably-Weiss M,
Hershko T,
Vogel J,
Altuvia S
(2012)
PNAS, 109, 12, 4621-6, 10.1073/pnas.1113113109, 22393021
PNAS, 109, 12, 4621-6, 10.1073/pnas.1113113109, 22393021
The ancestral SgrS RNA discriminates horizontally acquired Salmonella mRNAs through a single G-U wobble pair
Publication
Papenfort K,
Podkaminski D,
Hinton JC,
Vogel J
(2012)
PNAS, 109, 13, E757-64, 10.1073/pnas.1119414109, 22383560
PNAS, 109, 13, E757-64, 10.1073/pnas.1119414109, 22383560
Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis
Publication
Madhugiri R,
Pessi G,
Voss B,
Hahn J,
Sharma CM,
Reinhardt R,
Vogel J,
Hess WR,
Fischer H,
Evguenieva-Hackenberg E
(2012)
RNA Biology, 9, 1, 47-58, 10.4161/rna.9.1.18008, 22258152
RNA Biology, 9, 1, 47-58, 10.4161/rna.9.1.18008, 22258152
Global regulatory functions of the Staphylococcus aureus endoribonuclease III in gene expression
Publication
Lioliou E,
Sharma CM,
Caldelari I,
Helfer A,
Fechter P,
Vandenesch F,
Vogel J,
Romby P
(2012)
PLOS Biology, 8, 6, e1002782, 10.1371/journal.pgen.1002782, 22761586
PLOS Biology, 8, 6, e1002782, 10.1371/journal.pgen.1002782, 22761586
Use of aptamer tagging to identify in vivo protein binding partners of small regulatory RNAs
Publication
Corcoran CP,
Rieder R,
Podkaminski D,
Hofmann B,
Vogel J
(2012)
In: Bacterial Regulatory RNA: Methods and protocols (ed Keiler KC), 905, 177-200, 10.1007/978-1-61779-949-5_11, 22736004
In: Bacterial Regulatory RNA: Methods and protocols (ed Keiler KC), 905, 177-200, 10.1007/978-1-61779-949-5_11, 22736004
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
Publication
Kröger C,
Dillon SC,
Cameron AD,
Papenfort K,
Sivasankaran SK,
Hokamp K,
Chao Y,
Sittka A,
Hébrard M,
Händler K,
Colgan A,
Leekitcharoenphon P,
Langridge GC,
Lohan AJ,
Loftus B,
Lucchini S,
Ussery DW,
Dorman CJ,
Thomson NR,
Vogel J,
Hinton JC
(2012)
PNAS, 109, 20, E1277-86, 10.1073/pnas.1201061109, 22538806
PNAS, 109, 20, E1277-86, 10.1073/pnas.1201061109, 22538806
The transcriptional landscape of Chlamydia pneumoniae
Publication
Albrecht M,
Sharma CM,
Dittrich MT,
Müller T,
Reinhardt R,
Vogel J,
Rudel T
(2011)
Genome Biology, 12, 10, R98, 10.1186/gb-2011-12-10-r98, 21989159
Genome Biology, 12, 10, R98, 10.1186/gb-2011-12-10-r98, 21989159
Pervasive post-transcriptional control of genes involved in amino acid metabolism by the Hfq-dependent GcvB small RNA
Publication
Sharma CM,
Papenfort K,
Pernitzsch SR,
Mollenkopf H,
Hinton JC,
Vogel J
(2011)
Molecular Microbiology, 81, 5, 1144-65, 10.1111/j.1365-2958.2011.07751.x, 21696468
Molecular Microbiology, 81, 5, 1144-65, 10.1111/j.1365-2958.2011.07751.x, 21696468
Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
Publication
Schmidtke C,
Findeiß S,
Sharma CM,
Kuhfuß J,
Hoffmann S,
Vogel J,
Stadler PF,
Bonas U
(2011)
Nucleic Acids Research, 40, 5, 2020-31, 10.1093/nar/gkr904, 22080557
Nucleic Acids Research, 40, 5, 2020-31, 10.1093/nar/gkr904, 22080557