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Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism
Publication
Bohn C,
Rigoulay C,
Chabelskaya S,
Sharma CM,
Marchais A,
Skorski P,
Borezée-Durant E,
Barbet R,
Jacquet E,
Jacq A,
Gautheret D,
Felden B,
Vogel J,
Bouloc P
(2010)
Nucleic Acids Research, 38, 19, 6620-36, 10.1093/nar/gkq462, 20511587
Nucleic Acids Research, 38, 19, 6620-36, 10.1093/nar/gkq462, 20511587
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Publication
Pfeiffer V,
Papenfort K,
Lucchini S,
Hinton JC,
Vogel J
(2009)
Nature Structural & Molecular Biology, 16, 8, 840-6, 10.1038/nsmb.1631, 19620966
Nature Structural & Molecular Biology, 16, 8, 840-6, 10.1038/nsmb.1631, 19620966
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Publication
Hoffmann S,
Otto C,
Kurtz S,
Sharma CM,
Khaitovich P,
Vogel J,
Stadler PF,
Hackermüller J
(2009)
PLOS Computational Biology, 5, 9, e1000502, 10.1371/journal.pcbi.1000502, 19750212
PLOS Computational Biology, 5, 9, e1000502, 10.1371/journal.pcbi.1000502, 19750212
In vivo expression and purification of aptamer-tagged small RNA regulators
Publication
Said N,
Rieder R,
Hurwitz R,
Deckert J,
Urlaub H,
Vogel J
(2009)
Nucleic Acids Research, 37, 20, e133-e133, 10.1093/nar/gkp719
Nucleic Acids Research, 37, 20, e133-e133, 10.1093/nar/gkp719
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
Publication
Papenfort K,
Said N,
Welsink T,
Lucchini S,
Hinton JC,
Vogel J
(2009)
Molecular Microbiology, 74, 1, 139-158, 10.1111/j.1365-2958.2009.06857.x, 19732340
Molecular Microbiology, 74, 1, 139-158, 10.1111/j.1365-2958.2009.06857.x, 19732340
Deep sequencing analysis of the Methanosarcina mazei Gö1 transcriptome in response to nitrogen availability
Publication
Jäger D,
Sharma CM,
Thomsen J,
Ehlers C,
Vogel J,
Schmitz RA
(2009)
PNAS, 106, 51, 21878-82, 10.1073/pnas.0909051106, 19996181
PNAS, 106, 51, 21878-82, 10.1073/pnas.0909051106, 19996181
Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides
Publication
Berghoff BA,
Glaeser J,
Sharma CM,
Vogel J,
Klug G
(2009)
Molecular Microbiology, 74, 6, 1497-512, 10.1111/j.1365-2958.2009.06949.x, 19906181
Molecular Microbiology, 74, 6, 1497-512, 10.1111/j.1365-2958.2009.06949.x, 19906181
Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes
Publication
Sittka A,
Sharma CM,
Rolle K,
Vogel J
(2009)
RNA Biology, 6, 3, 266-75, 19333007
RNA Biology, 6, 3, 266-75, 19333007
Acid stress activation of the sigma(E) stress response in Salmonella enterica serovar Typhimurium
Publication
Muller C,
Bang I,
Velayudhan J,
Karlinsey J,
Papenfort K,
Vogel J,
Fang FC
(2009)
Molecular Microbiology, 71, 5, 1228-38, 10.1111/j.1365-2958.2009.06597.x, 19170886
Molecular Microbiology, 71, 5, 1228-38, 10.1111/j.1365-2958.2009.06597.x, 19170886
Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq
Publication
Sittka A,
Lucchini S,
Papenfort K,
Sharma CM,
Rolle K,
Binnewies TT,
Hinton JC,
Vogel J
(2008)
PLOS Genetics, 4, 8, e1000163, 10.1371/journal.pgen.1000163, 18725932
PLOS Genetics, 4, 8, e1000163, 10.1371/journal.pgen.1000163, 18725932