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Differential activation and functional specialization of miR-146 and miR-155 in innate immune sensing
Publication
Schulte LN,
Westermann AJ,
Vogel J
(2013)
Nucleic Acids Research, 41, 1, 542-53, 10.1093/nar/gks1030, 23143100
Nucleic Acids Research, 41, 1, 542-53, 10.1093/nar/gks1030, 23143100
Dual RNA-seq of pathogen and host
Publication
Westermann AJ,
Gorski SA,
Vogel J
(2012)
Nature Reviews Microbiology, 10, 9, 618-30, 10.1038/nrmicro2852, 22890146
Nature Reviews Microbiology, 10, 9, 618-30, 10.1038/nrmicro2852, 22890146
Improved Bacterial Single-Cell RNA-Seq through Automated MATQ-Seq and Cas9-Based Removal of rRNA Reads
Publication
Homberger C,
Hayward RJ,
Barquist L,
Vogel J
(2023)
mBio, 14, 2, e0355722, 10.1128/mbio.03557-22, 36880749
mBio, 14, 2, e0355722, 10.1128/mbio.03557-22, 36880749
Global profiling of the RNA and protein complexes of Escherichia coli by size exclusion chromatography followed by RNA sequencing and mass spectrometry (SEC-seq)
Publication
Chihara K,
Gerovac M,
Hör J,
Vogel J
(2022)
RNA, 29, 1, 123-39, 10.1261/rna.079439.122, 36328526
RNA, 29, 1, 123-39, 10.1261/rna.079439.122, 36328526
Discovery of new RNA classes and global RNA-binding proteins
Publication
Smirnov A,
Schneider C,
Hör J,
Vogel J
(2017)
Current Opinion in Microbiology, 39, 152-160, 10.1016/j.mib.2017.11.016, 29179042
Current Opinion in Microbiology, 39, 152-160, 10.1016/j.mib.2017.11.016, 29179042
MAPS integrates regulation of actin-targeting effector SteC into the virulence control network of Salmonella small RNA PinT
Publication
Correia Santos S,
Bischler T,
Westermann AJ,
Vogel J
(2021)
Cell Reports, 34, 5, 108722, 10.1016/j.celrep.2021.108722, 33535041
Cell Reports, 34, 5, 108722, 10.1016/j.celrep.2021.108722, 33535041
Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens
Publication
Michaux C,
Gerovac M,
Hansen EE,
Barquist L,
Vogel J
(2023)
microLife, 4, uqac027, 10.1093/femsml/uqac027, 37223738
microLife, 4, uqac027, 10.1093/femsml/uqac027, 37223738
Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
Publication
Hör J,
Matera G,
Vogel J,
Gottesman S,
Storz G
(2020)
EcoSal Plus, 9, 1, 10.1128/ecosalplus.ESP-0030-2019, 10.1128/ecosalplus.ESP-0030-2019, 32213244
EcoSal Plus, 9, 1, 10.1128/ecosalplus.ESP-0030-2019, 10.1128/ecosalplus.ESP-0030-2019, 32213244
Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria
Publication
Imdahl F,
Vafadarnejad E,
Homberger C,
Saliba AE,
Vogel J
(2020)
Nature Microbiology, 5, 10, 1202–1206, 10.1038/s41564-020-0774-1, 32807892
Nature Microbiology, 5, 10, 1202–1206, 10.1038/s41564-020-0774-1, 32807892
Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3' Ends
Publication
Holmqvist E,
Li L,
Bischler T,
Barquist L,
Vogel J
(2018)
Molecular Cell, 70, 5, 971-982.e6, 10.1016/j.molcel.2018.04.017, 29804828
Molecular Cell, 70, 5, 971-982.e6, 10.1016/j.molcel.2018.04.017, 29804828