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Grad-seq analysis of Enterococcus faecalis and Enterococcus faecium provides a global view of RNA and protein complexes in these two opportunistic pathogens
Publication
Michaux C,
Gerovac M,
Hansen EE,
Barquist L,
Vogel J
(2023)
microLife, 4, uqac027, 10.1093/femsml/uqac027, 37223738
microLife, 4, uqac027, 10.1093/femsml/uqac027, 37223738
Trans-Acting Small RNAs and Their Effects on Gene Expression in Escherichia coli and Salmonella enterica
Publication
Hör J,
Matera G,
Vogel J,
Gottesman S,
Storz G
(2020)
EcoSal Plus, 9, 1, 10.1128/ecosalplus.ESP-0030-2019, 10.1128/ecosalplus.ESP-0030-2019, 32213244
EcoSal Plus, 9, 1, 10.1128/ecosalplus.ESP-0030-2019, 10.1128/ecosalplus.ESP-0030-2019, 32213244
Single-cell RNA-sequencing reports growth-condition-specific global transcriptomes of individual bacteria
Publication
Imdahl F,
Vafadarnejad E,
Homberger C,
Saliba AE,
Vogel J
(2020)
Nature Microbiology, 5, 10, 1202–1206, 10.1038/s41564-020-0774-1, 32807892
Nature Microbiology, 5, 10, 1202–1206, 10.1038/s41564-020-0774-1, 32807892
Global Maps of ProQ Binding In Vivo Reveal Target Recognition via RNA Structure and Stability Control at mRNA 3' Ends
Publication
Holmqvist E,
Li L,
Bischler T,
Barquist L,
Vogel J
(2018)
Molecular Cell, 70, 5, 971-982.e6, 10.1016/j.molcel.2018.04.017, 29804828
Molecular Cell, 70, 5, 971-982.e6, 10.1016/j.molcel.2018.04.017, 29804828
INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors
Publication
Hör J,
Jung J,
Ðurica-Mitic S,
Barquist L,
Vogel J
(2022)
Nucleic Acids Research, 50, 22, e128, 10.1093/nar/gkac838, 36229039
Nucleic Acids Research, 50, 22, e128, 10.1093/nar/gkac838, 36229039
Functional characterization of the DUF1127-containing small protein YjiS of Salmonella Typhimurium
Publication
Venturini E,
Maaß S,
Bischler T,
Becher D,
Vogel J,
Westermann AJ
(2025)
microLife, 6, uqae026, 10.1093/femsml/uqae026, 39790481
microLife, 6, uqae026, 10.1093/femsml/uqae026, 39790481
Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON webserver
Publication
Jung JJ,
Popella L,
Do PT,
Pfau P,
Vogel J,
Barquist L
(2023)
RNA, 299, 5, 570-583, 10.1261/rna.079263.122, 36750372
RNA, 299, 5, 570-583, 10.1261/rna.079263.122, 36750372
Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli
Publication
Popella L,
Jung J,
Do PT,
Hayward RJ,
Barquist L,
Vogel J
(2022)
Nucleic Acids Research, 50, 11, 6435–6452, 10.1093/nar/gkac362, 35687096
Nucleic Acids Research, 50, 11, 6435–6452, 10.1093/nar/gkac362, 35687096
Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium
Publication
Michaux C,
Hansen EE,
Jenniches L,
Gerovac M,
Barquist L,
Vogel J
(2020)
Frontiers in Cellular and Infection Microbiology, 10, 600325, 10.3389/fcimb.2020.600325, 33324581
Frontiers in Cellular and Infection Microbiology, 10, 600325, 10.3389/fcimb.2020.600325, 33324581
Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads
Publication
Prezza G,
Heckel T,
Dietrich S,
Homberger C,
Westermann AJ,
Vogel J
(2020)
RNA, 26, 8, 1069-1078, 10.1261/rna.075945.120, 32345633
RNA, 26, 8, 1069-1078, 10.1261/rna.075945.120, 32345633