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INRI-seq enables global cell-free analysis of translation initiation and off-target effects of antisense inhibitors
Publication
Hör J,
Jung J,
Ðurica-Mitic S,
Barquist L,
Vogel J
(2022)
Nucleic Acids Research, 50, 22, e128, 10.1093/nar/gkac838, 36229039
Nucleic Acids Research, 50, 22, e128, 10.1093/nar/gkac838, 36229039
Functional characterization of the DUF1127-containing small protein YjiS of Salmonella Typhimurium
Publication
Venturini E,
Maaß S,
Bischler T,
Becher D,
Vogel J,
Westermann AJ
(2025)
microLife, 6, uqae026, 10.1093/femsml/uqae026, 39790481
microLife, 6, uqae026, 10.1093/femsml/uqae026, 39790481
Design and off-target prediction for antisense oligomers targeting bacterial mRNAs with the MASON webserver
Publication
Jung JJ,
Popella L,
Do PT,
Pfau P,
Vogel J,
Barquist L
(2023)
RNA, 299, 5, 570-583, 10.1261/rna.079263.122, 36750372
RNA, 299, 5, 570-583, 10.1261/rna.079263.122, 36750372
Comprehensive analysis of PNA-based antisense antibiotics targeting various essential genes in uropathogenic Escherichia coli
Publication
Popella L,
Jung J,
Do PT,
Hayward RJ,
Barquist L,
Vogel J
(2022)
Nucleic Acids Research, 50, 11, 6435–6452, 10.1093/nar/gkac362, 35687096
Nucleic Acids Research, 50, 11, 6435–6452, 10.1093/nar/gkac362, 35687096
Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium
Publication
Michaux C,
Hansen EE,
Jenniches L,
Gerovac M,
Barquist L,
Vogel J
(2020)
Frontiers in Cellular and Infection Microbiology, 10, 600325, 10.3389/fcimb.2020.600325, 33324581
Frontiers in Cellular and Infection Microbiology, 10, 600325, 10.3389/fcimb.2020.600325, 33324581
Improved bacterial RNA-seq by Cas9-based depletion of ribosomal RNA reads
Publication
Prezza G,
Heckel T,
Dietrich S,
Homberger C,
Westermann AJ,
Vogel J
(2020)
RNA, 26, 8, 1069-1078, 10.1261/rna.075945.120, 32345633
RNA, 26, 8, 1069-1078, 10.1261/rna.075945.120, 32345633
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
Publication
Westermann AJ,
Venturini E,
Sellin ME,
Förstner KU,
Hardt W,
Vogel J
(2019)
mBio, 10, 1, e02504-18, 10.1128/mBio.02504-18, 30602583
mBio, 10, 1, e02504-18, 10.1128/mBio.02504-18, 30602583
The primary transcriptome of Neisseria meningitidis and its interaction with the RNA chaperone Hfq
Publication
Heidrich N,
Bauriedl S,
Barquist L,
Li L,
Schoen C,
Vogel J
(2017)
Nucleic Acids Research, 45, 10, 6147-6167, 10.1093/nar/gkx168, 28334889
Nucleic Acids Research, 45, 10, 6147-6167, 10.1093/nar/gkx168, 28334889
Einzelzell-RNA-Sequenzierung beleuchtet den Infektionsprozess
Publication
Saliba AE,
Westermann AJ,
Vogel J
(2017)
BIOspektrum, 23, 5, 525-528, 10.1007/s12268-017-0836-y
BIOspektrum, 23, 5, 525-528, 10.1007/s12268-017-0836-y
Resolving host-pathogen interactions by dual RNA-seq
Publication
Westermann AJ,
Barquist L,
Vogel J
(2017)
PLOS Pathogens, 13, 2, e1006033, 10.1371/journal.ppat.1006033, 28207848
PLOS Pathogens, 13, 2, e1006033, 10.1371/journal.ppat.1006033, 28207848