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Molecular phenotyping of infection-associated small non-coding RNAs
Publication
Barquist L,
Westermann AJ,
Vogel J
(2016)
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158
Global RNA profiles show target selectivity and physiological effects of peptide-delivered antisense antibiotics
Publication
Popella L,
Jung J,
Popova K,
Ðurica-Mitic S,
Barquist L,
Vogel J
(2021)
Nucleic Acids Research, 49, 8, 4705-4724, 10.1093/nar/gkab242, 33849070
Nucleic Acids Research, 49, 8, 4705-4724, 10.1093/nar/gkab242, 33849070
Grad-seq shines light on unrecognized RNA and protein complexes in the model bacterium Escherichia coli
Publication
Hör J,
Di Giorgio S,
Gerovac M,
Venturini E,
Förstner KU,
Vogel J
(2020)
Nucleic Acids Research, 48, 16, 9301-9319, 10.1093/nar/gkaa676, 32813020
Nucleic Acids Research, 48, 16, 9301-9319, 10.1093/nar/gkaa676, 32813020
Global discovery of bacterial RNA-binding proteins by RNase-sensitive gradient profiles reports a new FinO domain protein
Publication
Gerovac M,
El Mouali Y,
Kuper J,
Kisker C,
Barquist L,
Vogel J
(2020)
RNA, 26, 10, 1448-1463, 10.1261/rna.076992.120, 32646969
RNA, 26, 10, 1448-1463, 10.1261/rna.076992.120, 32646969
An antisense oligomer conjugate with unpredicted bactericidal activity against Fusobacterium nucleatum
Publication
Cosi V,
Jung J,
Popella L,
Ponath F,
Ghosh C,
Barquist L,
Vogel J
(2025)
mBio, 16, 6, e0052425, 10.1128/mbio.00524-25, 40298409
mBio, 16, 6, e0052425, 10.1128/mbio.00524-25, 40298409
Cellular RNA Targets of Cold Shock Proteins CspC and CspE and Their Importance for Serum Resistance in Septicemic Escherichia coli
Publication
Yair Y,
Michaux C,
Biran D,
Bernhard J,
Vogel J,
Barquist L,
Ron EZ
(2022)
mSystems, 7, 4, e0008622, 10.1128/msystems.00086-22, 35695420
mSystems, 7, 4, e0008622, 10.1128/msystems.00086-22, 35695420
The minimal meningococcal ProQ protein has an intrinsic capacity for structure-based global RNA recognition
Publication
Bauriedl S,
Gerovac M,
Heidrich N,
Bischler T,
Barquist L,
Vogel J,
Schoen C
(2020)
Nature Communications, 11, 2823, 10.1038/s41467-020-16650-6, 32499480
Nature Communications, 11, 2823, 10.1038/s41467-020-16650-6, 32499480
Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
Publication
Chihara K,
Bischler T,
Barquist L,
Monzon VA,
Noda N,
Vogel J,
Tsuneda S
(2019)
mSystems, 4, 6, e00590-19, 10.1128/mSystems.00590-19, 31796567
mSystems, 4, 6, e00590-19, 10.1128/mSystems.00590-19, 31796567
Single-cell RNA-seq: advances and future challenges
Publication
Saliba AE,
Westermann AJ,
Gorski SA,
Vogel J
(2014)
Nucleic Acids Research, 42, 14, 8845-60, 10.1093/nar/gku555, 25053837
Nucleic Acids Research, 42, 14, 8845-60, 10.1093/nar/gku555, 25053837
Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo
Publication
Holmqvist E,
Wright PR,
Li L,
Bischler T,
Barquist L,
Reinhardt R,
Backofen R,
Vogel J
(2016)
The EMBO Journal, 35, 9, 991-1011, 10.15252/embj.201593360, 27044921
The EMBO Journal, 35, 9, 991-1011, 10.15252/embj.201593360, 27044921