Search
Genome organization and DNA accessibility control antigenic variation in trypanosomes
Publication
Müller LS,
Cosentino RO,
Förstner KU,
Guizetti J,
Wedel C,
Kaplan N,
Janzen CJ,
Arampatzi P,
Vogel J,
Steinbiss S,
Otto TD,
Saliba AE,
Sebra RP,
Siegel TN
(2018)
Nature, 563, 7729, 121-125, 10.1038/s41586-018-0619-8, 30333624
Nature, 563, 7729, 121-125, 10.1038/s41586-018-0619-8, 30333624
An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection
Publication
Müller AA,
Dolowschiak T,
Sellin ME,
Felmy B,
Verbree C,
Gadient S,
Westermann AJ,
Vogel J,
LeibundGut-Landmann S,
Hardt W
(2016)
PLOS Pathogens, 12, 6, e1005723, 10.1371/journal.ppat.1005723, 27341123
PLOS Pathogens, 12, 6, e1005723, 10.1371/journal.ppat.1005723, 27341123
Transcriptomic profiling of individual bacteria by MATQ-seq
Publication
Homberger C,
Imdahl F,
Hayward RJ,
Barquist L,
Saliba AE,
Vogel J
(2025)
Nature Protocols, (Online ahead of print), 10.1038/s41596-025-01157-5, 40204970
Nature Protocols, (Online ahead of print), 10.1038/s41596-025-01157-5, 40204970
RNA landscape of the emerging cancer-associated microbe Fusobacterium nucleatum
Publication
Ponath F,
Tawk C,
Zhu Y,
Barquist L,
Faber F,
Vogel J
(2021)
Nature Microbiology, 6, 8, 1007-1020, 10.1038/s41564-021-00927-7, 34239075
Nature Microbiology, 6, 8, 1007-1020, 10.1038/s41564-021-00927-7, 34239075
Improved RNA stability estimation through Bayesian modeling reveals most Salmonella transcripts have subminute half-lives
Publication
Jenniches L,
Michaux C,
Popella L,
Reichardt S,
Vogel J,
Westermann AJ,
Barquist L
(2024)
Proceedings of the National Academy of Sciences of the United States of America, 121, 14, e2308814121, 10.1073/pnas.2308814121, 38527194
Proceedings of the National Academy of Sciences of the United States of America, 121, 14, e2308814121, 10.1073/pnas.2308814121, 38527194
RNA target profiles direct the discovery of virulence functions for the cold-shock proteins CspC and CspE
Publication
Michaux C,
Holmqvist E,
Vasicek E,
Sharan M,
Barquist L,
Westermann AJ,
Gunn JS,
Vogel J
(2017)
PNAS, 114, 26, 6824-6829, 10.1073/pnas.1620772114, 28611217
PNAS, 114, 26, 6824-6829, 10.1073/pnas.1620772114, 28611217
Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella
Publication
Saliba AE,
Li L,
Westermann AJ,
Appenzeller S,
Stapels DA,
Schulte LN,
Helaine S,
Vogel J
(2016)
Nature Microbiology, 2, 16206, 10.1038/nmicrobiol.2016.206, 27841856
Nature Microbiology, 2, 16206, 10.1038/nmicrobiol.2016.206, 27841856
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production
Publication
Lamm-Schmidt V,
Fuchs M,
Sulzer J,
Gerovac M,
Hör J,
Dersch P,
Vogel J,
Faber F
(2021)
microLife, 2, uqab004, 10.1093/femsml/uqab004
microLife, 2, uqab004, 10.1093/femsml/uqab004
RNA recording in single bacterial cells using reprogrammed tracrRNAs
Publication
Jiao C,
Reckstadt C,
König F,
Homberger C,
Yu J,
Vogel J,
Westermann AJ,
Sharma CM,
Beisel CL
(2023)
Nature Biotechnology, 41, 8, 1107-1116, 10.1038/s41587-022-01604-8, 36604543
Nature Biotechnology, 41, 8, 1107-1116, 10.1038/s41587-022-01604-8, 36604543
Salmonella persisters undermine host immune defenses during antibiotic treatment
Publication
Stapels DA,
Hill PW,
Westermann AJ,
Fisher RA,
Thurston TL,
Saliba AE,
Blommestein I,
Vogel J,
Helaine S
(2018)
Science, 362, 6419, 1156-1160, 10.1126/science.aat7148, 30523110
Science, 362, 6419, 1156-1160, 10.1126/science.aat7148, 30523110