
Suche
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings
Publikation
Feasey NA,
Hadfield J,
Keddy KH,
Dallman TJ,
Jacobs J,
Deng X,
Wigley P,
Barquist L,
Langridge GC,
Feltwell T,
Harris SR,
Mather AE,
Fookes M,
Aslett M,
Msefula CL,
Kariuki S,
MacLennan CA,
Onsare RS,
Weill F,
Le Hello S,
Smith AM,
McClelland M,
Desai P,
Parry CM,
Cheesbrough J,
French N,
Campos J,
Chabalgoity JA,
Betancor L,
Hopkins KL,
Nair S,
Humphrey TJ,
Lunguya O,
Cogan TA,
Tapia MD,
Sow SO,
Tennant SM,
Bornstein K,
Levine MM,
Lacharme-Lora L,
Everett DB,
Kingsley RA,
Parkhill J,
Heyderman RS,
Dougan G,
Gordon MA,
Thomson NR
(2016)
Nature Genetics, 48, 10, 1211-1217, 10.1038/ng.3644, 27548315
Nature Genetics, 48, 10, 1211-1217, 10.1038/ng.3644, 27548315
The Life-Cycle of the HIV-1 Gag-RNA Complex
Publikation
Mailler E,
Bernacchi S,
Marquet R,
Paillart J,
Vivet-Boudou V,
Smyth RP
(2016)
Viruses, 8, 9, E248, 10.3390/v8090248, 27626439
Viruses, 8, 9, E248, 10.3390/v8090248, 27626439
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Publikation
Jiang Y,
Oron TR,
Clark WT,
Bankapur AR,
D'Andrea D,
Lepore R,
Funk CS,
Kahanda I,
Verspoor KM,
Ben-Hur A,
Koo DC,
Penfold-Brown D,
Shasha D,
Youngs N,
Bonneau R,
Lin A,
Sahraeian SM,
Martelli PL,
Profiti G,
Casadio R,
Cao R,
Zhong Z,
Cheng J,
Altenhoff A,
Skunca N,
Dessimoz C,
Dogan T,
Hakala K,
Kaewphan S,
Mehryary F,
Salakoski T,
Ginter F,
Fang H,
Smithers B,
Oates M,
Gough J,
Törönen P,
Koskinen P,
Holm L,
Chen C,
Hsu W,
Bryson K,
Cozzetto D,
Minneci F,
Jones DT,
Chapman S,
Bkc D,
Khan IK,
Kihara D,
Ofer D,
Rappoport N,
Stern A,
Cibrian-Uhalte E,
Denny P,
Foulger RE,
Hieta R,
Legge D,
Lovering RC,
Magrane M,
Melidoni AN,
Mutowo-Meullenet P,
Pichler K,
Shypitsyna A,
Li B,
Zakeri P,
ElShal S,
Tranchevent L,
Das S,
Dawson NL,
Lee D,
Lees JG,
Sillitoe I,
Bhat P,
Nepusz T,
Romero AE,
Sasidharan R,
Yang H,
Paccanaro A,
Gillis J,
Sedeño-Cortés AE,
Pavlidis P,
Feng S,
Cejuela JM,
Goldberg T,
Hamp T,
Richter L,
Salamov A,
Gabaldon T,
Marcet-Houben M,
Supek F,
Gong Q,
Ning W,
Zhou Y,
Tian W,
Falda M,
Fontana P,
Lavezzo E,
Toppo S,
Ferrari C,
Giollo M,
Piovesan D,
Tosatto SC,
Del Pozo A,
Fernández JM,
Maietta P,
Valencia A,
Tress ML,
Benso A,
Di Carlo S,
Politano G,
Savino A,
Rehman HU,
Re M,
Mesiti M,
Valentini G,
Bargsten JW,
van Dijk AD,
Gemovic B,
Glisic S,
Perovic V,
Veljkovic V,
Veljkovic N,
Almeida-E-Silva DC,
Vencio RZ,
Sharan M,
Vogel J,
Kansakar L,
Zhang S,
Vucetic S,
Wang Z,
Sternberg MJ,
Wass MN,
Huntley RP,
Martin MJ,
O'Donovan C,
Robinson PN,
Moreau Y,
Tramontano A,
Babbitt PC,
Brenner SE,
Linial M,
Orengo CA,
Rost B,
Greene CS,
Mooney SD,
Friedberg I,
Radivojac P
(2016)
Genome Biology, 17, 1, 184, 10.1186/s13059-016-1037-6, 27604469
Genome Biology, 17, 1, 184, 10.1186/s13059-016-1037-6, 27604469
Rethinking the Hierarchy of Sugar Utilization in Bacteria
Publikation
Beisel CL,
Afroz T
(2016)
Journal of Bacteriology, 198, 3, 374-376, 10.1128/JB.00890-15
Journal of Bacteriology, 198, 3, 374-376, 10.1128/JB.00890-15
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families
Publikation
Barquist L,
Burge SW,
Gardner PP
(2016)
Current Protocols in Bioinformatics, 54, 12.13.1-12.13.25, 10.1002/cpbi.4, 27322404
Current Protocols in Bioinformatics, 54, 12.13.1-12.13.25, 10.1002/cpbi.4, 27322404
MIMEAnTo: profiling functional RNA in mutational interference mapping experiments
Publikation
Smith MR,
Smyth RP,
Marquet R,
Kleist M
(2016)
Bioinformatics, 32, 21, 3369-3370, 10.1093/bioinformatics/btw479, 27402903
Bioinformatics, 32, 21, 3369-3370, 10.1093/bioinformatics/btw479, 27402903
The CRISPR RNA-guided surveillance complex in Escherichia coli accommodates extended RNA spacers
Publikation
Luo ML,
Jackson RN,
Denny SR,
Tokmina-Lukaszewska M,
Maksimchuk KR,
Lin W,
Bothner B,
Wiedenheft B,
Beisel CL
(2016)
Nucleic Acids Research, 44, 15, 7385-94, 10.1093/nar/gkw421, 27174938
Nucleic Acids Research, 44, 15, 7385-94, 10.1093/nar/gkw421, 27174938
Single-cell RNA-seq ties macrophage polarization to growth rate of intracellular Salmonella
Publikation
Saliba AE,
Li L,
Westermann AJ,
Appenzeller S,
Stapels DA,
Schulte LN,
Helaine S,
Vogel J
(2016)
Nature Microbiology, 2, 16206, 10.1038/nmicrobiol.2016.206, 27841856
Nature Microbiology, 2, 16206, 10.1038/nmicrobiol.2016.206, 27841856
The target spectrum of SdsR small RNA in Salmonella
Publikation
Fröhlich KS,
Haneke K,
Papenfort K,
Vogel J
(2016)
Nucleic Acids Research, 44, 21, 10406-22, 10.1093/nar/gkw632, 27407104
Nucleic Acids Research, 44, 21, 10406-22, 10.1093/nar/gkw632, 27407104
Molecular phenotyping of infection-associated small non-coding RNAs
Publikation
Barquist L,
Westermann AJ,
Vogel J
(2016)
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158
Philosophical Transactions of the Royal Society of London B: Biological Sciences, 371, 1707, 20160081, 10.1098/rstb.2016.0081, 27672158