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The small RNAs of Salmonella
Publication
Javayel S,
Papenfort K,
Vogel J
(2010)
In: Salmonella: From Genome to Function (ed Prowollik S)
In: Salmonella: From Genome to Function (ed Prowollik S)
PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins
Publication
Hafner M,
Landthaler M,
Burger L,
Khorshid M,
Hausser J,
Berninger P,
Rothballer A,
Ascano M,
Jungkamp A,
Munschauer M,
Ulrich A,
Wardle GS,
Dewell S,
Zavolan M,
Tuschl T
(2010)
Journal of Visualized Experiments, 41, pii: 2034, 10.3791/2034, 20644507
Journal of Visualized Experiments, 41, pii: 2034, 10.3791/2034, 20644507
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
Publication
Hafner M,
Landthaler M,
Burger L,
Khorshid M,
Hausser J,
Berninger P,
Rothballer A,
Ascano M,
Jungkamp A,
Munschauer M,
Ulrich A,
Wardle GS,
Dewell S,
Zavolan M,
Tuschl T
(2010)
Cell, 141, 1, 129-41, 10.1016/j.cell.2010.03.009, 20371350
Cell, 141, 1, 129-41, 10.1016/j.cell.2010.03.009, 20371350
Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
Publication
Pfeiffer V,
Papenfort K,
Lucchini S,
Hinton JC,
Vogel J
(2009)
Nature Structural & Molecular Biology, 16, 8, 840-6, 10.1038/nsmb.1631, 19620966
Nature Structural & Molecular Biology, 16, 8, 840-6, 10.1038/nsmb.1631, 19620966
Synthetic control of a fitness tradeoff in yeast nitrogen metabolism
Publication
Bayer TS,
Hoff KG,
Beisel CL,
Lee JJ,
Smolke CD
(2009)
Journal of Biological Engineering, 3, 1, 10.1186/1754-1611-3-1, 19118500
Journal of Biological Engineering, 3, 1, 10.1186/1754-1611-3-1, 19118500
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
Publication
Hoffmann S,
Otto C,
Kurtz S,
Sharma CM,
Khaitovich P,
Vogel J,
Stadler PF,
Hackermüller J
(2009)
PLOS Computational Biology, 5, 9, e1000502, 10.1371/journal.pcbi.1000502, 19750212
PLOS Computational Biology, 5, 9, e1000502, 10.1371/journal.pcbi.1000502, 19750212
In vivo expression and purification of aptamer-tagged small RNA regulators
Publication
Said N,
Rieder R,
Hurwitz R,
Deckert J,
Urlaub H,
Vogel J
(2009)
Nucleic Acids Research, 37, 20, e133-e133, 10.1093/nar/gkp719
Nucleic Acids Research, 37, 20, e133-e133, 10.1093/nar/gkp719
Design Principles for Riboswitch Function
Publication
Beisel CL,
Smolke CD
(2009)
PLOS Computational Biology, 5, 4, e1000363, 10.1371/journal.pcbi.1000363, 19381267
PLOS Computational Biology, 5, 4, e1000363, 10.1371/journal.pcbi.1000363, 19381267
A green fluorescent protein (GFP)-based plasmid system to study post-transcriptional control of gene expression in vivo
Publication
Urban JH,
Vogel J
(2009)
In: Riboswitches: Methods and protocols (ed Serganov A), Methods Mol Biol, 540, 301-19, 10.1007/978-1-59745-558-9_22, 19381569
In: Riboswitches: Methods and protocols (ed Serganov A), Methods Mol Biol, 540, 301-19, 10.1007/978-1-59745-558-9_22, 19381569
Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA
Publication
Papenfort K,
Said N,
Welsink T,
Lucchini S,
Hinton JC,
Vogel J
(2009)
Molecular Microbiology, 74, 1, 139-158, 10.1111/j.1365-2958.2009.06857.x, 19732340
Molecular Microbiology, 74, 1, 139-158, 10.1111/j.1365-2958.2009.06857.x, 19732340